Stem-loop ssa-mir-125b-1

Accession

MI0026454

Description

Salmo salar ssa-mir-125b-1 precursor miRNA

Literature search

3 open access papers mention ssa-mir-125b-1
(12 sentences)

Sequence

UCCCUGAGACCCUUAACCUGUGAggucauaguaggucACAGGUGAGGUCCUCGGGAA
..((((((..(((((.(((((((............))))))))))))..))))))..

Structure

UC      AC     A       gguca 
  CCUGAG  CCUUA CCUGUGA     u
  ||||||  ||||| |||||||      
  GGGCUC  GGAGU GGACAcu     a
AA      CU     -       ggaug 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-125b-5p

• Accession: MIMAT0032307
• Description: Salmo salar ssa-miR-125b-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-125b-1-3p

• Accession: MIMAT0032308
• Description: Salmo salar ssa-miR-125b-1-3p mature miRNA
• Sequence: 38 - ACAGGUGAGGUCCUCGGGAA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482