Stem-loop ssa-mir-130a-2

Accession

MI0026469

Description

Salmo salar ssa-mir-130a-2 precursor miRNA

Sequence

177384 reads, 845.0 reads per million, 87 experiments

ACUCUUUCCCUGUUGCACUACUgugggagcuguagcuagCAGUGCAAUAAUGAAAGGGCAUc
.(((((((..(((((((((.((.....(((....))))).)))))))))..)))))))....

Structure

---A       CC         A  guggg   u 
    CUCUUUC  UGUUGCACU CU     agc g
    |||||||  ||||||||| ||     |||  
    GGGAAAG  AUAACGUGA ga     ucg u
cUAC       UA         C  -----   a 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-130a-5p

• Accession: MIMAT0032321
• Description: Salmo salar ssa-miR-130a-5p mature miRNA
• Sequence: 1 - ACUCUUUCCCUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-130a-2-3p

• Accession: MIMAT0032323
• Description: Salmo salar ssa-miR-130a-2-3p mature miRNA
• Sequence: 40 - CAGUGCAAUAAUGAAAGGGCAU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482