Stem-loop ssa-mir-130b-2

Accession

MI0026471

Description

Salmo salar ssa-mir-130b-2 precursor miRNA

Sequence

26762 reads, 204.0 reads per million, 87 experiments

UGCCCCUUUUAUAUUGUCCUACUggugacccucuaaugaaagCAGUGCAAUGUUAAAAGGGCa
(((((.(((.(((((((...((((.(..............).))))))))))).))).)))))

Structure

     C   U       CCU    g gacccu 
UGCCC UUU AUAUUGU   ACUg u      c
||||| ||| |||||||   |||| |       
aCGGG AAA UGUAACG   UGAC a      u
     A   U       ---    g aaguaa 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-130b-2-5p

• Accession: MIMAT0032326
• Description: Salmo salar ssa-miR-130b-2-5p mature miRNA
• Sequence: 1 - UGCCCCUUUUAUAUUGUCCUACU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-130b-3p

• Accession: MIMAT0032325
• Description: Salmo salar ssa-miR-130b-3p mature miRNA
• Sequence: 43 - CAGUGCAAUGUUAAAAGGGC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482