Stem-loop ssa-mir-1338

Accession

MI0026479

Description

Salmo salar ssa-mir-1338 precursor miRNA

Literature search

2 open access papers mention ssa-mir-1338
(9 sentences)

Sequence

AGGACUGUCCAACCUGAGAAUggugacuuuaggcucaAUCUCAGGUUCGUCAGCCCAUG
.((.(((.(.(((((((((.((((........)).)).))))))))).).))).))...

Structure

--A  A   U C         A  -  gac 
   GG CUG C AACCUGAGA Ug gu   u
   || ||| | ||||||||| || ||    
   CC GAC G UUGGACUCU ac cg   u
GUA  C   U C         A  u  gau 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-1338-5p

• Accession: MIMAT0032335
• Description: Salmo salar ssa-miR-1338-5p mature miRNA
• Sequence: 1 - AGGACUGUCCAACCUGAGAAU - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-1338-3p

• Accession: MIMAT0032336
• Description: Salmo salar ssa-miR-1338-3p mature miRNA
• Sequence: 38 - AUCUCAGGUUCGUCAGCCCAUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482