miRBase entry: ssa-mir-133b-1

Stem-loop ssa-mir-133b-1


Accession
MI0026481
Description
Salmo salar ssa-mir-133b-1 precursor miRNA


Sequence

1430620 reads, 3993.0 reads per million, 87 experiments
GCUGGUCAAACGGAACCAAGUCAGguguuuuagugagguUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((..........)))..)))))).)).))..)))))).

Structure
-      CA  C  A      --   Ggug 
 GCUGGU  AA GG ACCAAG  UCA    u
 ||||||  || || ||||||  |||     
 CGACCA  UU CC UGGUUu  agu    u
U      AC  C  C      gg   gauu 


Annotation confidence High
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Genome context
Unknown

Database links

Mature ssa-miR-133b-5p

Accession MIMAT0032339
Description Salmo salar ssa-miR-133b-5p mature miRNA
Sequence 1 - GCUGGUCAAACGGAACCAAGUCAG - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-133b-3p

Accession MIMAT0032340
Description Salmo salar ssa-miR-133b-3p mature miRNA
Sequence 40 - UUGGUCCCCUUCAACCAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482