Stem-loop ssa-mir-133b-2

Accession

MI0026482

Description

Salmo salar ssa-mir-133b-2 precursor miRNA

Sequence

1428730 reads, 3988.0 reads per million, 87 experiments

GCUGGUCAAACGGAACCAAGUCAGguguuucagugagguUUGGUCCCCUUCAACCAGCU
((((((..((.((.((((((((.(.((...)).)..)))))))).)).))..)))))).

Structure

-      CA  C  A        -A g  u 
 GCUGGU  AA GG ACCAAGUC  G ug  
 ||||||  || || ||||||||  | || u
 CGACCA  UU CC UGGUUugg  u ac  
U      AC  C  C        ag g  u 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-133b-5p

• Accession: MIMAT0032339
• Description: Salmo salar ssa-miR-133b-5p mature miRNA
• Sequence: 1 - GCUGGUCAAACGGAACCAAGUCAG - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-133b-3p

• Accession: MIMAT0032340
• Description: Salmo salar ssa-miR-133b-3p mature miRNA
• Sequence: 40 - UUGGUCCCCUUCAACCAGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482