Stem-loop ssa-mir-135b-1

Accession

MI0026486

Description

Salmo salar ssa-mir-135b-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-135b-1
(2 sentences)

Sequence

6518 reads, 153.0 reads per million, 87 experiments

UAUGGCUUUCUAUUCCUAUGUGAuuucucucugguaugucAUGUAGGGUUUAAAGCCAUUG
.((((((((....(((((((((((.((.....))...)))))))))))...))))))))..

Structure

-U        CUAU           --u  u 
  AUGGCUUU    UCCUAUGUGAu   uc c
  ||||||||    |||||||||||   || u
  UACCGAAA    GGGAUGUAcug   gg c
GU        -UUU           uau  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-135b-5p

• Accession: MIMAT0032344
• Description: Salmo salar ssa-miR-135b-5p mature miRNA
• Sequence: 1 - UAUGGCUUUCUAUUCCUAUGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-135b-1-3p

• Accession: MIMAT0032345
• Description: Salmo salar ssa-miR-135b-1-3p mature miRNA
• Sequence: 41 - AUGUAGGGUUUAAAGCCAUUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482