miRBase entry: ssa-mir-135c-1

Stem-loop ssa-mir-135c-1


Accession
MI0026489
Description
Salmo salar ssa-mir-135c-1 precursor miRNA


Sequence

6429 reads, 24.0 reads per million, 87 experiments
UAUGGCUUUUUAUUCCUACGUGAGgauagauguguucAUGUAGGGAUAGAAGCCACU
..((((((((.(((((((((((((.((....)).)))))))))))))))))))))..

Structure
UA        U             g  a 
  UGGCUUUU AUUCCUACGUGAG au g
  |||||||| ||||||||||||| ||  
  ACCGAAGA UAGGGAUGUAcuu ug a
UC        -             g  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-135c-5p

Accession MIMAT0032348
Description Salmo salar ssa-miR-135c-5p mature miRNA
Sequence 1 - UAUGGCUUUUUAUUCCUACGUGAG - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-135c-3p

Accession MIMAT0032349
Description Salmo salar ssa-miR-135c-3p mature miRNA
Sequence 38 - AUGUAGGGAUAGAAGCCACU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482