Stem-loop ssa-mir-138-2

Accession

MI0026494

Description

Salmo salar ssa-mir-138-2 precursor miRNA

Sequence

5074 reads, 69.0 reads per million, 87 experiments

AGCUGGUGUUGUGAAUCAGGCCGAugccacacaccugcuauaacccgGCUAUUUCACAACACCAGGGU
..(((((((((((((...(((((......................)))))..)))))))))))))...

Structure

-AG             UCA     Augccacaca 
   CUGGUGUUGUGAA   GGCCG          c
   |||||||||||||   |||||           
   GACCACAACACUU   UCGgc          c
UGG             -UA     ccaauaucgu 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-138-5p

• Accession: MIMAT0032352
• Description: Salmo salar ssa-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCGA - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-138-3p

• Accession: MIMAT0032353
• Description: Salmo salar ssa-miR-138-3p mature miRNA
• Sequence: 48 - GCUAUUUCACAACACCAGGGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482