Stem-loop ssa-mir-138-3

Accession

MI0026495

Description

Salmo salar ssa-mir-138-3 precursor miRNA

Sequence

2234 reads, 16.0 reads per million, 87 experiments

AGCUGGUGUUGUGAAUCAGGCCGcugugguguugagaccgGCUACUUCCCAACACCAGGGUc
..(((((((((.(((...((((.....(((......)))))))..))).)))))))))....

Structure

--AG         U   UCA    Gcugu   gu 
    CUGGUGUUG GAA   GGCC     ggu  u
    ||||||||| |||   ||||     |||   
    GACCACAAC CUU   UCGg     cca  g
cUGG         C   -CA    -----   ga 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-138-5p

• Accession: MIMAT0032352
• Description: Salmo salar ssa-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-138-3-3p

• Accession: MIMAT0032354
• Description: Salmo salar ssa-miR-138-3-3p mature miRNA
• Sequence: 41 - GCUACUUCCCAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482