Stem-loop ssa-mir-142a-1

Accession

MI0026500

Description

Salmo salar ssa-mir-142a-1 precursor miRNA

Sequence

1928583 reads, 22310.0 reads per million, 87 experiments

CAUAAAGUAGAAAGCACUACUAAacuccucaccacaguGUAGUGUUUCCUACUUUAUGGAug
((((((((((.(((((((((..................))))))))).))))))))))....

Structure

----          A         UAAacucc 
    CAUAAAGUAG AAGCACUAC        u
    |||||||||| |||||||||         
    GUAUUUCAUC UUUGUGAUG        c
guAG          C         ugacacca 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-142a-5p

• Accession: MIMAT0032361
• Description: Salmo salar ssa-miR-142a-5p mature miRNA
• Sequence: 1 - CAUAAAGUAGAAAGCACUACUAA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-142a-3p

• Accession: MIMAT0032362
• Description: Salmo salar ssa-miR-142a-3p mature miRNA
• Sequence: 39 - GUAGUGUUUCCUACUUUAUGGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482