Stem-loop ssa-mir-142b

Accession

MI0026502

Description

Salmo salar ssa-mir-142b precursor miRNA

Sequence

1604005 reads, 19354.0 reads per million, 87 experiments

UCCAUAAAGUAGAGAGUACUACuaaacuccucugcacaguGUAGUGUUUCCUACUUUAUGGAu
((((((((((((.(((((((((..................))))))))).)))))))))))).

Structure

-            A         uaaacucc 
 UCCAUAAAGUAG GAGUACUAC        u
 |||||||||||| |||||||||         
 AGGUAUUUCAUC UUUGUGAUG        c
u            C         ugacacgu 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-142b-5p

• Accession: MIMAT0032363
• Description: Salmo salar ssa-miR-142b-5p mature miRNA
• Sequence: 1 - UCCAUAAAGUAGAGAGUACUAC - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-142b-3p

• Accession: MIMAT0032364
• Description: Salmo salar ssa-miR-142b-3p mature miRNA
• Sequence: 41 - GUAGUGUUUCCUACUUUAUGGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482