miRBase entry: ssa-mir-143

Stem-loop ssa-mir-143


Accession
MI0026503
Description
Salmo salar ssa-mir-143 precursor miRNA

Literature search
3 open access papers mention ssa-mir-143
(10 sentences)

Sequence

5946031 reads, 42766.0 reads per million, 87 experiments
GGUGCAGUGCUGCAUCUCUGGucaauugggagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..

Structure
-- G         G      U  -  aa 
  G UGCAGUGCU CAUCUC GG uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 


Annotation confidence High
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Genome context
Unknown

Database links

Mature ssa-miR-143-5p

Accession MIMAT0032365
Description Salmo salar ssa-miR-143-5p mature miRNA
Sequence 1 - GGUGCAGUGCUGCAUCUCUGG - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-143-3p

Accession MIMAT0032366
Description Salmo salar ssa-miR-143-3p mature miRNA
Sequence 35 - UGAGAUGAAGCACUGUAGCUC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482