Stem-loop ssa-mir-145-1

Accession

MI0026505

Description

Salmo salar ssa-mir-145-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-145-1
(4 sentences)

Sequence

GUCCAGUUUUCCCAGGAAUCCCUugggcaaucaacaacggggAUUCCUGGAAAUACUGUUCUU
...((((.((.((((((((((((((.........))..)))))))))))).)).)))).....

Structure

--GUC    U  C            --  ggc 
     CAGU UU CCAGGAAUCCCU  ug   a
     |||| || ||||||||||||  ||   a
     GUCA AA GGUCCUUAgggg  ac   u
UUCUU    U  A            ca  aac 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-145-5p

• Accession: MIMAT0032369
• Description: Salmo salar ssa-miR-145-5p mature miRNA
• Sequence: 1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-145-3p

• Accession: MIMAT0032370
• Description: Salmo salar ssa-miR-145-3p mature miRNA
• Sequence: 43 - AUUCCUGGAAAUACUGUUCUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482