Stem-loop ssa-mir-146a-1

Accession

MI0026507

Description

Salmo salar ssa-mir-146a-1 precursor miRNA

Literature search

3 open access papers mention ssa-mir-146a-1
(18 sentences)

Sequence

3855320 reads, 14994.0 reads per million, 87 experiments

UGAGAACUGAAUUCCAUAGAUGGuggcuacaggagaugucAUCUAUGGGCUCAGUUCUUCUGg
.(((((((((..(((((((((((...((.....))...))))))))))).)))))))))....

Structure

---U         AU           ugg  a 
    GAGAACUGA  UCCAUAGAUGG   cu c
    |||||||||  |||||||||||   || a
    UUCUUGACU  GGGUAUCUAcu   ga g
gGUC         -C           gua  g 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-146a-5p

• Accession: MIMAT0032371
• Description: Salmo salar ssa-miR-146a-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAUAGAUGG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-146a-3p

• Accession: MIMAT0032372
• Description: Salmo salar ssa-miR-146a-3p mature miRNA
• Sequence: 41 - AUCUAUGGGCUCAGUUCUUCUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482