Stem-loop ssa-mir-146a-3

Accession

MI0026509

Description

Salmo salar ssa-mir-146a-3 precursor miRNA

Literature search

3 open access papers mention ssa-mir-146a-3
(21 sentences)

Sequence

UGAGAACUGAAUUCCAUAGAUGGuaguugcucagauagacAUCUAUGGAUUCAGUUCUUCU
.(((((((((((.(((((((((...(((.....)))...))))))))))))))))))))..

Structure

-U           U         Gua   g 
  GAGAACUGAAU CCAUAGAUG   guu c
  ||||||||||| |||||||||   ||| u
  UUCUUGACUUA GGUAUCUAc   uag c
UC           -         aga   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-146a-5p

• Accession: MIMAT0032371
• Description: Salmo salar ssa-miR-146a-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAUAGAUGG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-146a-3-3p

• Accession: MIMAT0032373
• Description: Salmo salar ssa-miR-146a-3-3p mature miRNA
• Sequence: 41 - AUCUAUGGAUUCAGUUCUUCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482