Stem-loop ssa-mir-146b

Accession

MI0026510

Description

Salmo salar ssa-mir-146b precursor miRNA

Literature search

2 open access papers mention ssa-mir-146b
(14 sentences)

Sequence

UGAGAACUGAAGUCCAUAGAUGGuaguugcucagauagacAUCUAUGGACUCAAUUCUUCUU
.(((((.(((.(((((((((((...(((.....)))...)))))))))))))).)))))...

Structure

--U     C   A           Gua   g 
   GAGAA UGA GUCCAUAGAUG   guu c
   ||||| ||| |||||||||||   ||| u
   UUCUU ACU CAGGUAUCUAc   uag c
UUC     A   -           aga   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-146b-5p

• Accession: MIMAT0032374
• Description: Salmo salar ssa-miR-146b-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAGUCCAUAGAUGG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-146b-3p

• Accession: MIMAT0032375
• Description: Salmo salar ssa-miR-146b-3p mature miRNA
• Sequence: 41 - AUCUAUGGACUCAAUUCUUCUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482