Stem-loop ssa-mir-146d-1

Accession

MI0026511

Description

Salmo salar ssa-mir-146d-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-146d-1
(4 sentences)

Sequence

UGAGAACUGAAUUCCAAGGGUUguauuucugaagucagCCCAUGGAGCUCAGUUCUUAAG
((((((((((.(((((.((((((.((((...)))))))))).))))).))))))))))..

Structure

--          A     A      u    c 
  UGAGAACUGA UUCCA GGGUUg auuu  
  |||||||||| ||||| |||||| |||| u
  AUUCUUGACU GAGGU CCCgac ugaa  
GA          C     A      -    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-146d-5p

• Accession: MIMAT0032376
• Description: Salmo salar ssa-miR-146d-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAAGGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-146d-3p

• Accession: MIMAT0032377
• Description: Salmo salar ssa-miR-146d-3p mature miRNA
• Sequence: 39 - CCCAUGGAGCUCAGUUCUUAAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482