Stem-loop ssa-mir-15a

Accession

MI0026522

Description

Salmo salar ssa-mir-15a precursor miRNA

Literature search

1 open access papers mention ssa-mir-15a
(2 sentences)

Sequence

77544 reads, 563.0 reads per million, 87 experiments

cgUAGCAGCACGUCAUGGUUUGUAgugauaguaaagaugcAGACCAUGAAGAGCUGCUGCU
.((((((((...((((((((((((.............))))))))))))...)))))))).

Structure

c        ACG            gugau 
 gUAGCAGC   UCAUGGUUUGUA     a
 ||||||||   ||||||||||||     g
 CGUCGUCG   AGUACCAGAcgu     u
U        AGA            agaaa 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-15a-5p

• Accession: MIMAT0032394
• Description: Salmo salar ssa-miR-15a-5p mature miRNA
• Sequence: 3 - UAGCAGCACGUCAUGGUUUGUA - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-15a-3p

• Accession: MIMAT0032395
• Description: Salmo salar ssa-miR-15a-3p mature miRNA
• Sequence: 41 - AGACCAUGAAGAGCUGCUGCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482