Stem-loop ssa-mir-15c-1

Accession

MI0026524

Description

Salmo salar ssa-mir-15c-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-15c-1
(3 sentences)

Sequence

110487 reads, 1064.0 reads per million, 87 experiments

UAGCAGCGCAUCAUGGUUUGAAACaguguugaaaagaugCGAAUCAUCAUUUGCUGCUUUA
.(((((((.((.((((((((...................)))))))).)).)))))))...

Structure

--U       C  C        AAACagug 
   AGCAGCG AU AUGGUUUG        u
   ||||||| || ||||||||        u
   UCGUCGU UA UACUAAGC        g
AUU       U  C        guagaaaa 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-15c-5p

• Accession: MIMAT0032398
• Description: Salmo salar ssa-miR-15c-5p mature miRNA
• Sequence: 1 - UAGCAGCGCAUCAUGGUUUGAAAC - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-15c-3p

• Accession: MIMAT0032399
• Description: Salmo salar ssa-miR-15c-3p mature miRNA
• Sequence: 40 - CGAAUCAUCAUUUGCUGCUUUA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482