Stem-loop ssa-mir-15c-2

Accession

MI0026525

Description

Salmo salar ssa-mir-15c-2 precursor miRNA

Literature search

1 open access papers mention ssa-mir-15c-2
(3 sentences)

Sequence

103280 reads, 1054.0 reads per million, 87 experiments

UAGCAGCGCAUCAUGGUUUGAAACaauguuggaaaggUGCGAACCAUCAUUUGCUGCUUua
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))...

Structure

--U       C  C        AA  aa gu 
   AGCAGCG AU AUGGUUUG  AC  u  u
   ||||||| || ||||||||  ||  |   
   UCGUCGU UA UACCAAGC  Ug  a  g
auU       U  C        -G  ga ag 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-15c-5p

• Accession: MIMAT0032398
• Description: Salmo salar ssa-miR-15c-5p mature miRNA
• Sequence: 1 - UAGCAGCGCAUCAUGGUUUGAAAC - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-15c-2-3p

• Accession: MIMAT0032400
• Description: Salmo salar ssa-miR-15c-2-3p mature miRNA
• Sequence: 38 - UGCGAACCAUCAUUUGCUGCUU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482