Stem-loop ssa-mir-15d

Accession

MI0026526

Description

Salmo salar ssa-mir-15d precursor miRNA

Sequence

98434 reads, 1265.0 reads per million, 87 experiments

UAGCAGCACAGAAUGGUUUGUGgguuacacagagaugCAGGCCGUACUGUGCUGCCGCAgu
..(((((((((.((((((((((..((.....))..)))))))))).)))))))))......

Structure

----UA         A          gg  a 
      GCAGCACAG AUGGUUUGUG  uu c
      ||||||||| ||||||||||  || a
      CGUCGUGUC UGCCGGACgu  ag c
ugACGC         A          ag  a 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-15d-5p

• Accession: MIMAT0032401
• Description: Salmo salar ssa-miR-15d-5p mature miRNA
• Sequence: 1 - UAGCAGCACAGAAUGGUUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-15d-3p

• Accession: MIMAT0032402
• Description: Salmo salar ssa-miR-15d-3p mature miRNA
• Sequence: 38 - CAGGCCGUACUGUGCUGCCGCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482