Stem-loop ssa-mir-15e

Accession

MI0026527

Description

Salmo salar ssa-mir-15e precursor miRNA

Literature search

2 open access papers mention ssa-mir-15e
(2 sentences)

Sequence

7575 reads, 71.0 reads per million, 87 experiments

AAGCAGCACAGAAUGGUUUGUGgguaauacagggauaCAGGCUGUACUGUGCUGUUGCAgu
.((((((((((.((((((((((.............)))))))))).)))))))))).....

Structure

----A          A          gguaa 
     AGCAGCACAG AUGGUUUGUG     u
     |||||||||| ||||||||||     a
     UUGUCGUGUC UGUCGGACau     c
ugACG          A          aggga 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-15e-5p

• Accession: MIMAT0032403
• Description: Salmo salar ssa-miR-15e-5p mature miRNA
• Sequence: 1 - AAGCAGCACAGAAUGGUUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-15e-3p

• Accession: MIMAT0032404
• Description: Salmo salar ssa-miR-15e-3p mature miRNA
• Sequence: 38 - CAGGCUGUACUGUGCUGUUGCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482