Stem-loop ssa-mir-16a-1

Accession

MI0026528

Description

Salmo salar ssa-mir-16a-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-16a-1
(1 sentences)

Sequence

UAGCAGCACGUAAAUAUUGGAGuuaaaacuacugcugaagccuCCAGUAUUGUUCGUGCUGCUGA
((((((((((..((((((((((...................))))))))))...)))))))))).

Structure

-          -UA          uuaaaacu 
 UAGCAGCACG   AAUAUUGGAG        a
 ||||||||||   ||||||||||        c
 GUCGUCGUGC   UUAUGACCuc        u
A          UUG          cgaagucg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-16a-5p

• Accession: MIMAT0032405
• Description: Salmo salar ssa-miR-16a-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGAG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-16a-3p

• Accession: MIMAT0032406
• Description: Salmo salar ssa-miR-16a-3p mature miRNA
• Sequence: 44 - CCAGUAUUGUUCGUGCUGCUGA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482