Stem-loop ssa-mir-16b

Accession

MI0026530

Description

Salmo salar ssa-mir-16b precursor miRNA

Sequence

593560 reads, 2642.0 reads per million, 87 experiments

UAGCAGCACGUAAAUAUUGGugugagaauagaccccaaccCCAAUAUUAGCUGUGCUGCUUC
.((((((((((.((((((((.((..(........)..)).)))))))).)).))))))))..

Structure

-U        -  A        u  ga aau 
  AGCAGCAC GU AAUAUUGG gu  g   a
  |||||||| || |||||||| ||  |    
  UCGUCGUG CG UUAUAACC ca  c   g
CU        U  A        c  ac cca 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-16b-5p

• Accession: MIMAT0032408
• Description: Salmo salar ssa-miR-16b-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGG - 20
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-16b-3p

• Accession: MIMAT0032409
• Description: Salmo salar ssa-miR-16b-3p mature miRNA
• Sequence: 41 - CCAAUAUUAGCUGUGCUGCUUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482