Stem-loop ssa-mir-16c

Accession

MI0026531

Description

Salmo salar ssa-mir-16c precursor miRNA

Sequence

594942 reads, 3390.0 reads per million, 87 experiments

UAGCAGCACGUAAAUAUUGGcgugagaauacagaccccgaccCCAAUAUUAGCUGUGCUGCUUC
.((((((((((.((((((((.((..(..........)..)).)))))))).)).))))))))..

Structure

-U        -  A        c  ga aaua 
  AGCAGCAC GU AAUAUUGG gu  g    c
  |||||||| || |||||||| ||  |     
  UCGUCGUG CG UUAUAACC ca  c    a
CU        U  A        c  gc ccag 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-16c-5p

• Accession: MIMAT0032410
• Description: Salmo salar ssa-miR-16c-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGG - 20
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-16c-3p

• Accession: MIMAT0032411
• Description: Salmo salar ssa-miR-16c-3p mature miRNA
• Sequence: 43 - CCAAUAUUAGCUGUGCUGCUUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482