Stem-loop ssa-mir-1788

Accession

MI0026532

Description

Salmo salar ssa-mir-1788 precursor miRNA

Sequence

GGCUUGUUUUAAGUUGCCUGcgaccuguuuaaagacuCAGGCAGCUAAAGCAAGUCUG
(((((((((((.((((((((.(..((......)).).)))))))))))))))))))..

Structure

--           A        c ac  gu 
  GGCUUGUUUUA GUUGCCUG g  cu  u
  ||||||||||| |||||||| |  ||   
  CUGAACGAAAU CGACGGAC c  ga  u
GU           -        u -a  aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-1788-5p

• Accession: MIMAT0032412
• Description: Salmo salar ssa-miR-1788-5p mature miRNA
• Sequence: 1 - GGCUUGUUUUAAGUUGCCUG - 20
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-1788-3p

• Accession: MIMAT0032413
• Description: Salmo salar ssa-miR-1788-3p mature miRNA
• Sequence: 38 - CAGGCAGCUAAAGCAAGUCUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482