Stem-loop ssa-mir-181a-3

Accession

MI0026538

Description

Salmo salar ssa-mir-181a-3 precursor miRNA

Literature search

4 open access papers mention ssa-mir-181a-3
(15 sentences)

Sequence

2455501 reads, 9499.0 reads per million, 87 experiments

AACAUUCAACGCUGUCGGUGAGuuugagccucugacagaaACCAUCGACGGUUGGCUGUACC
.(((.(((..((((((((((.((((.............))))))))))))))))).)))...

Structure

--A   U   AC          A    gagcc 
   ACA UCA  GCUGUCGGUG Guuu     u
   ||| |||  |||||||||| ||||     c
   UGU GGU  UGGCAGCUAC CAaa     u
CCA   C   --          -    gacag 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-181a-5p

• Accession: MIMAT0032417
• Description: Salmo salar ssa-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181a-3-3p

• Accession: MIMAT0032420
• Description: Salmo salar ssa-miR-181a-3-3p mature miRNA
• Sequence: 41 - ACCAUCGACGGUUGGCUGUACC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482