Stem-loop ssa-mir-181b

Accession

MI0026541

Description

Salmo salar ssa-mir-181b precursor miRNA

Literature search

4 open access papers mention ssa-mir-181b
(7 sentences)

Sequence

54883 reads, 221.0 reads per million, 87 experiments

AACAUUCAUUGCUGUCGCUGGGUuggacucugugaaaaagCUCACUGAACAAUGAGUGCAA
..(((((((((...(((.((((((..............)))))).))).)))))))))...

Structure

-AA         CUG   C      ggacuc 
   CAUUCAUUG   UCG UGGGUu      u
   |||||||||   ||| ||||||       
   GUGAGUAAC   AGU ACUCga      g
AAC         --A   C      aaaagu 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-181b-5p

• Accession: MIMAT0032423
• Description: Salmo salar ssa-miR-181b-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGCUGUCGCUGGGU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181b-3p

• Accession: MIMAT0032424
• Description: Salmo salar ssa-miR-181b-3p mature miRNA
• Sequence: 41 - CUCACUGAACAAUGAGUGCAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482