Stem-loop ssa-mir-181c

Accession

MI0026542

Description

Salmo salar ssa-mir-181c precursor miRNA

Literature search

5 open access papers mention ssa-mir-181c
(20 sentences)

Sequence

853479 reads, 3393.0 reads per million, 87 experiments

AACAUUCAUUGCUGUCGGUGGGUuugaugugaauauaaCUCACUGAUCAAUGAAUGAACA
..(((((((((..(((((((((((..((....))..))))))))))))))))))))....

Structure

--AA         CU           ug  g 
    CAUUCAUUG  GUCGGUGGGUu  au u
    |||||||||  |||||||||||  ||  
    GUAAGUAAC  UAGUCACUCaa  ua g
ACAA         --           ua  a 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-181c-5p

• Accession: MIMAT0032425
• Description: Salmo salar ssa-miR-181c-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGCUGUCGGUGGGU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181c-3p

• Accession: MIMAT0032426
• Description: Salmo salar ssa-miR-181c-3p mature miRNA
• Sequence: 39 - CUCACUGAUCAAUGAAUGAACA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482