Stem-loop ssa-mir-183-2

Accession

MI0026545

Description

Salmo salar ssa-mir-183-2 precursor miRNA

Literature search

1 open access papers mention ssa-mir-183-2
(5 sentences)

Sequence

15519 reads, 243.0 reads per million, 87 experiments

UAUGGCACUGGUAGAAUUCACUgugaaggcacacuaucagUGAAUUACCAUUGGGCCAUA
((((((..(((((..((((((((...((.....))..)))))))))))))....))))))

Structure

      --AC     GA        uga  g 
UAUGGC    UGGUA  AUUCACUg   ag c
||||||    |||||  ||||||||   || a
AUACCG    ACCAU  UAAGUgac   uc c
      GGUU     --        -ua  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-183-5p

• Accession: MIMAT0032429
• Description: Salmo salar ssa-miR-183-5p mature miRNA
• Sequence: 1 - UAUGGCACUGGUAGAAUUCACU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-183-2-3p

• Accession: MIMAT0032431
• Description: Salmo salar ssa-miR-183-2-3p mature miRNA
• Sequence: 41 - UGAAUUACCAUUGGGCCAUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482