Stem-loop ssa-mir-194a-2

Accession

MI0026556

Description

Salmo salar ssa-mir-194a-2 precursor miRNA

Sequence

9371 reads, 45.0 reads per million, 87 experiments

UGUAACAGCAACUCCAUGUGGAAguugucuguguuCCAGUGGAGAUGCUGUUACCUGc
.(((((((((.((((((.(((((..........))))))))))).)))))))))....

Structure

---U         A      G     guug 
    GUAACAGCA CUCCAU UGGAA    u
    ||||||||| |||||| |||||     
    CAUUGUCGU GAGGUG ACCuu    c
cGUC         A      -     gugu 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-194a-5p

• Accession: MIMAT0032447
• Description: Salmo salar ssa-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGAA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-194a-3p

• Accession: MIMAT0032448
• Description: Salmo salar ssa-miR-194a-3p mature miRNA
• Sequence: 36 - CCAGUGGAGAUGCUGUUACCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482