Stem-loop ssa-mir-194c

Accession

MI0026558

Description

Salmo salar ssa-mir-194c precursor miRNA

Sequence

721 reads, 4.0 reads per million, 78 experiments

UGUAACAGCAACUCCAUAUGGAAuagcucaggguuCCAGUGGAGCUGCUGUUAUGGG
.(((((((((.((((((.((((((........)))))))))))).)))))))))...

Structure

--U         A      A      agc 
   GUAACAGCA CUCCAU UGGAAu   u
   ||||||||| |||||| ||||||    
   UAUUGUCGU GAGGUG ACCuug   c
GGG         C      -      gga 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-194c-5p

• Accession: MIMAT0032451
• Description: Salmo salar ssa-miR-194c-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUAUGGAA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-194c-3p

• Accession: MIMAT0032452
• Description: Salmo salar ssa-miR-194c-3p mature miRNA
• Sequence: 36 - CCAGUGGAGCUGCUGUUAUGGG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482