Stem-loop ssa-mir-196a-4

Accession

MI0026562

Description

Salmo salar ssa-mir-196a-4 precursor miRNA

Sequence

199780 reads, 578.0 reads per million, 80 experiments

UAGGUAGUUUCAUGUUGUUGGgauugacuuccuggcUCGGCAACAAGAAACUGCCUUGa
.((((((((((.((((((((((...(.....)...)))))))))).))))))))))...

Structure

--U          A          auu a 
   AGGUAGUUUC UGUUGUUGGg   g c
   |||||||||| ||||||||||   | u
   UCCGUCAAAG ACAACGGCUc   c u
aGU          A          ggu c 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-196a-5p

• Accession: MIMAT0032453
• Description: Salmo salar ssa-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGG - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-196a-4-3p

• Accession: MIMAT0032457
• Description: Salmo salar ssa-miR-196a-4-3p mature miRNA
• Sequence: 37 - UCGGCAACAAGAAACUGCCUUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482