Stem-loop ssa-mir-1-1

Accession

MI0026579

Description

Salmo salar ssa-mir-1-1 precursor miRNA

Sequence

26728634 reads, 74569.0 reads per million, 87 experiments

aCAUACUUCUUUAUGUACCCAUAugaacauaugauagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((...............))))).))))))))))))))))..

Structure

--                AC     ugaaca 
  aCAUACUUCUUUAUGU  CCAUA      u
  ||||||||||||||||  |||||      a
  UGUAUGAAGAAAUGUA  GGUau      u
UA                -A     cgauag 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-1-5p

• Accession: MIMAT0032473
• Description: Salmo salar ssa-miR-1-5p mature miRNA
• Sequence: 2 - CAUACUUCUUUAUGUACCCAUA - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-1-3p

• Accession: MIMAT0032472
• Description: Salmo salar ssa-miR-1-3p mature miRNA
• Sequence: 41 - UGGAAUGUAAAGAAGUAUGUAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482