Stem-loop ssa-mir-214-1

Accession

MI0026611

Description

Salmo salar ssa-mir-214-1 precursor miRNA

Literature search

1 open access papers mention ssa-mir-214-1
(3 sentences)

Sequence

827990 reads, 2698.0 reads per million, 87 experiments

UGCCUGUCUACACUUGCUGUGCAGAacauccuggaaccuguACAGCAGGCACAGACAGGCAGa
(((((((((...((((((((((((.............))))))))))))...)))))))))..

Structure

--         ACA            Aacau 
  UGCCUGUCU   CUUGCUGUGCAG     c
  |||||||||   ||||||||||||     c
  ACGGACAGA   GGACGACAuguc     u
aG         CAC            caagg 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-214-5p

• Accession: MIMAT0032514
• Description: Salmo salar ssa-miR-214-5p mature miRNA
• Sequence: 1 - UGCCUGUCUACACUUGCUGUGCAGA - 25
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-214-3p

• Accession: MIMAT0032515
• Description: Salmo salar ssa-miR-214-3p mature miRNA
• Sequence: 42 - ACAGCAGGCACAGACAGGCAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482