Stem-loop ssa-mir-214-2

Accession

MI0026612

Description

Salmo salar ssa-mir-214-2 precursor miRNA

Literature search

1 open access papers mention ssa-mir-214-2
(3 sentences)

Sequence

826374 reads, 2686.0 reads per million, 87 experiments

UGCCUGUCUACACUUGCUGUGCAGAccuuccuauccuguACAGCAGGCACAGACAGGCAGa
(((((((((...((((((((((((...........))))))))))))...)))))))))..

Structure

--         ACA            Accu 
  UGCCUGUCU   CUUGCUGUGCAG    u
  |||||||||   ||||||||||||    c
  ACGGACAGA   GGACGACAuguc    c
aG         CAC            cuau 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-214-5p

• Accession: MIMAT0032514
• Description: Salmo salar ssa-miR-214-5p mature miRNA
• Sequence: 1 - UGCCUGUCUACACUUGCUGUGCAGA - 25
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-214-3p

• Accession: MIMAT0032515
• Description: Salmo salar ssa-miR-214-3p mature miRNA
• Sequence: 40 - ACAGCAGGCACAGACAGGCAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482