Stem-loop ssa-mir-216a

Accession

MI0026614

Description

Salmo salar ssa-mir-216a precursor miRNA

Literature search

1 open access papers mention ssa-mir-216a
(4 sentences)

Sequence

UAAUCUCUGCAGGCAACUGUGAugucuuaugguuucucACAUUGACCUGGAGAGGUUCUG
.(((((((.(((((((.(((((..............)))))))).)))).)))))))...

Structure

--U       G    -   C     ugucuu 
   AAUCUCU CAGG CAA UGUGA      a
   ||||||| |||| ||| |||||       
   UUGGAGA GUCC GUU ACAcu      u
GUC       G    A   -     cuuugg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-216a-5p

• Accession: MIMAT0032516
• Description: Salmo salar ssa-miR-216a-5p mature miRNA
• Sequence: 1 - UAAUCUCUGCAGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-216a-3p

• Accession: MIMAT0032517
• Description: Salmo salar ssa-miR-216a-3p mature miRNA
• Sequence: 39 - ACAUUGACCUGGAGAGGUUCUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482