Stem-loop ssa-mir-2187

Accession

MI0026616

Description

Salmo salar ssa-mir-2187 precursor miRNA

Sequence

1838 reads, 25.0 reads per million, 86 experiments

uUUAAUUAGUAUAGCCUGUAUUAGugaucacaccaauucuUUACAGGCUAUGCUAAUCUAUGc
....((((((((((((((((((.(((....))).)).....))))))))))))))))......

Structure

--uUUA                -----  A   a 
      AUUAGUAUAGCCUGUA     UU Gug u
      ||||||||||||||||     || |||  
      UAAUCGUAUCGGACAU     aa cac c
cGUAUC                Uucuu  c   a 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-2187-5p

• Accession: MIMAT0032520
• Description: Salmo salar ssa-miR-2187-5p mature miRNA
• Sequence: 2 - UUAAUUAGUAUAGCCUGUAUUAG - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-2187-3p

• Accession: MIMAT0032521
• Description: Salmo salar ssa-miR-2187-3p mature miRNA
• Sequence: 41 - UUACAGGCUAUGCUAAUCUAUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482