Stem-loop ssa-mir-218-2

Accession

MI0026619

Description

Salmo salar ssa-mir-218-2 precursor miRNA

Sequence

UUGUGCUUGAUCUAACCAUGUGcccccgccuacacucgccucACAUGGUUCCGUCAAGCACCAGG
..(((((((((..(((((((((.....((........))..)))))))))..)))))))))....

Structure

--UU         CU         ccccc  cua 
    GUGCUUGAU  AACCAUGUG     gc   c
    |||||||||  |||||||||     ||    
    CACGAACUG  UUGGUACAc     cg   a
GGAC         CC         ---uc  cuc 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-218-5p

• Accession: MIMAT0032524
• Description: Salmo salar ssa-miR-218-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-218-3p

• Accession: MIMAT0032525
• Description: Salmo salar ssa-miR-218-3p mature miRNA
• Sequence: 43 - ACAUGGUUCCGUCAAGCACCAGG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482