Stem-loop ssa-mir-21a-1

Accession

MI0026626

Description

Salmo salar ssa-mir-21a-1 precursor miRNA

Literature search

3 open access papers mention ssa-mir-21a-1
(17 sentences)

Sequence

UAGCUUAUCAGACUGGUGUUGACUguuugaaucacauggCGACAACGGUCUGUAAGCUGU
(((((((.(((((((.(((((.((((.((...)).))))))))).)))))))))))))).

Structure

-       U       G     A    u  a 
 UAGCUUA CAGACUG UGUUG CUgu ug  
 ||||||| ||||||| ||||| |||| || a
 GUCGAAU GUCUGGC ACAGC ggua ac  
U       -       A     -    c  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-21a-5p

• Accession: MIMAT0032533
• Description: Salmo salar ssa-miR-21a-5p mature miRNA
• Sequence: 1 - UAGCUUAUCAGACUGGUGUUGACU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-21a-3p

• Accession: MIMAT0032534
• Description: Salmo salar ssa-miR-21a-3p mature miRNA
• Sequence: 40 - CGACAACGGUCUGUAAGCUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482