Stem-loop ssa-mir-23a-3

Accession

MI0026636

Description

Salmo salar ssa-mir-23a-3 precursor miRNA

Literature search

2 open access papers mention ssa-mir-23a-3
(4 sentences)

Sequence

525918 reads, 3285.0 reads per million, 87 experiments

GGAAUUCCUGGUAGAGUGAUUUuuaagacuaaagacugaAUCACAUUGCCAGGGAUUUCCA
((((((((((((((.(((((((...............))))))).))))))))))))))..

Structure

--              A       uuaaga 
  GGAAUUCCUGGUAG GUGAUUU      c
  |||||||||||||| |||||||      u
  CUUUAGGGACCGUU CACUAag      a
AC              A       ucagaa 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-23a-3-5p

• Accession: MIMAT0032548
• Description: Salmo salar ssa-miR-23a-3-5p mature miRNA
• Sequence: 1 - GGAAUUCCUGGUAGAGUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-23a-3p

• Accession: MIMAT0032549
• Description: Salmo salar ssa-miR-23a-3p mature miRNA
• Sequence: 40 - AUCACAUUGCCAGGGAUUUCCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482