Stem-loop ssa-mir-23a-1

Accession

MI0026638

Description

Salmo salar ssa-mir-23a-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-23a-1
(4 sentences)

Sequence

GGAUUCCUGGCAGAGUGAUUUGauauuguaucauaaaAUCACAUUGCCAGGGAUUUCC
.((((((((((((.(((((((((((...)))))...)))))).))))))))))))...

Structure

--G            A      ---     u 
   GAUUCCUGGCAG GUGAUU   UGaua  
   |||||||||||| ||||||   ||||| u
   UUAGGGACCGUU CACUAa   acuau  
CCU            A      aau     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-23a-3p

• Accession: MIMAT0032549
• Description: Salmo salar ssa-miR-23a-3p mature miRNA
• Sequence: 38 - AUCACAUUGCCAGGGAUUUCC - 58
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-23a-5p

• Accession: MIMAT0032551
• Description: Salmo salar ssa-miR-23a-5p mature miRNA
• Sequence: 1 - GGAUUCCUGGCAGAGUGAUUUG - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482