Stem-loop ssa-mir-23b

Accession

MI0026640

Description

Salmo salar ssa-mir-23b precursor miRNA

Literature search

1 open access papers mention ssa-mir-23b
(1 sentences)

Sequence

196049 reads, 2581.0 reads per million, 87 experiments

GGGUUCCUGGCGUGCUGAUUUgugacuuaagauaaaAUCACAUUGCCAGGGAUUACCAcc
((((((((((((((.((((((.............)))))))).))))))))))..))...

Structure

---  --          -  C      gugac 
   GG  GUUCCUGGCG UG UGAUUU     u
   ||  |||||||||| || ||||||     u
   CC  UAGGGACCGU AC ACUAaa     a
ccA  AU          U  -      auaga 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-23b-5p

• Accession: MIMAT0032552
• Description: Salmo salar ssa-miR-23b-5p mature miRNA
• Sequence: 1 - GGGUUCCUGGCGUGCUGAUUU - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-23b-3p

• Accession: MIMAT0032553
• Description: Salmo salar ssa-miR-23b-3p mature miRNA
• Sequence: 37 - AUCACAUUGCCAGGGAUUACCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482