Stem-loop ssa-mir-25-1

Accession

MI0026646

Description

Salmo salar ssa-mir-25-1 precursor miRNA

Literature search

4 open access papers mention ssa-mir-25-1
(24 sentences)

Sequence

AGGCGGAGUCUUGGGCAAUUGCCggcaaucuuaagaggCAUUGCACUUGUCUCGGUCUGA
((((.(((.(..(.(((((.(((.............)))))))).)..).))).))))..

Structure

--    G   U UU G     U   ggcaa 
  AGGC GAG C  G GCAAU GCC     u
  |||| ||| |  | ||||| |||     c
  UCUG CUC G  C CGUUA Cgg     u
AG    G   U UU A     -   agaau 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-25-5p

• Accession: MIMAT0032560
• Description: Salmo salar ssa-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGUCUUGGGCAAUUGCC - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-25-3p

• Accession: MIMAT0032561
• Description: Salmo salar ssa-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482