Stem-loop ssa-mir-27a-1

Accession

MI0026657

Description

Salmo salar ssa-mir-27a-1 precursor miRNA

Sequence

238714 reads, 1087.0 reads per million, 87 experiments

AGGACUUAGCCAGCUUUGUGAACAgaucugugaaagcccaugUUCACAGUGGCUAAGUUCCGCu
.(((((((((((...(((((((((...((.....))....))))))))))))))))))))....

Structure

---A           GCU         -gau  g 
    GGACUUAGCCA   UUGUGAACA    cu u
    |||||||||||   |||||||||    || g
    CUUGAAUCGGU   GACACUUgu    ga a
uCGC           ---         accc  a 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-27a-5p

• Accession: MIMAT0032573
• Description: Salmo salar ssa-miR-27a-5p mature miRNA
• Sequence: 1 - AGGACUUAGCCAGCUUUGUGAACA - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-27a-3p

• Accession: MIMAT0032574
• Description: Salmo salar ssa-miR-27a-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCCGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482