Stem-loop ssa-mir-30b

Accession

MI0026678

Description

Salmo salar ssa-mir-30b precursor miRNA

Literature search

4 open access papers mention ssa-mir-30b
(8 sentences)

Sequence

4551214 reads, 16769.0 reads per million, 87 experiments

UGUAAACAUCCCCGACUGGAAgcugugauguacauguucuagcUUUCAGUAGGGUGUUUGCUGC
.((((((((((...(((((((((((.(((......))).))))))))))).))))))))))...

Structure

--U          CCG           u   gu 
   GUAAACAUCC   ACUGGAAgcug gau  a
   ||||||||||   ||||||||||| |||   
   CGUUUGUGGG   UGACUUUcgau uug  c
CGU          --A           c   ua 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-30b-5p

• Accession: MIMAT0032604
• Description: Salmo salar ssa-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCCCGACUGGAA - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30b-3p

• Accession: MIMAT0032605
• Description: Salmo salar ssa-miR-30b-3p mature miRNA
• Sequence: 44 - UUUCAGUAGGGUGUUUGCUGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482