Stem-loop ssa-mir-30c-1

Accession

MI0026679

Description

Salmo salar ssa-mir-30c-1 precursor miRNA

Literature search

4 open access papers mention ssa-mir-30c-1
(9 sentences)

Sequence

1180085 reads, 11967.0 reads per million, 87 experiments

UGUAAACAUCCUUGACUGGAAGCUgggguuuggacagcaagggCUUUCAGUCGGAUGUUUGCAGc
(((((((((((..(((((((((((...(((.....)))...))))))))))))))))))))))..

Structure

--           UU           ggg   u 
  UGUAAACAUCC  GACUGGAAGCU   guu g
  |||||||||||  |||||||||||   ||| g
  ACGUUUGUAGG  CUGACUUUCgg   cga a
cG           --           gaa   c 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-30c-5p

• Accession: MIMAT0032606
• Description: Salmo salar ssa-miR-30c-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30c-3p

• Accession: MIMAT0032607
• Description: Salmo salar ssa-miR-30c-3p mature miRNA
• Sequence: 44 - CUUUCAGUCGGAUGUUUGCAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482