Stem-loop ssa-mir-30d-2

Accession

MI0026682

Description

Salmo salar ssa-mir-30d-2 precursor miRNA

Literature search

3 open access papers mention ssa-mir-30d-2
(5 sentences)

Sequence

1536031 reads, 15408.0 reads per million, 87 experiments

UGUAAACAUCCUUGACUGAAAGCUgguguuucauauagggcuUUUCAGUCGGAUGUUUGCAGcu
(((((((((((..(((((((((((.((((...))))..))).)))))))))))))))))))...

Structure

---           UU        -   -g    u 
   UGUAAACAUCC  GACUGAAA GCU  gugu  
   |||||||||||  |||||||| |||  |||| u
   ACGUUUGUAGG  CUGACUUU cgg  uaua  
ucG           --        u   ga    c 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-30d-5p

• Accession: MIMAT0032608
• Description: Salmo salar ssa-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUUGACUGAAAGCU - 24
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-30d-2-3p

• Accession: MIMAT0032610
• Description: Salmo salar ssa-miR-30d-2-3p mature miRNA
• Sequence: 43 - UUUCAGUCGGAUGUUUGCAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482