Stem-loop ssa-mir-338a-1

Accession

MI0026688

Description

Salmo salar ssa-mir-338a-1 precursor miRNA

Sequence

AACAAUAUCCUGAUGCUGCAUGAGUgugucaaguggaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((............))))))))))))).))).))))).

Structure

-     U   -         CAU    guguc 
 AACAA AUC CUGAUGCUG   GAGU     a
 ||||| ||| |||||||||   ||||      
 UUGUU UAG GACUACGAC   CUca     a
G     U   U         ---    aggug 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-338a-3p

• Accession: MIMAT0032615
• Description: Salmo salar ssa-miR-338a-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-338a-5p

• Accession: MIMAT0032616
• Description: Salmo salar ssa-miR-338a-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGAUGCUGCAUGAGU - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482